Autism Spectrum Disorder: From genetic correlation to candidate genes

Authors

DOI:

https://doi.org/10.33448/rsd-v14i4.48581

Keywords:

Neurodevelopmental disorders, Autism Spectrum Disorder, DNA copy number variations.

Abstract

Autism spectrum disorder (ASD) is part of the Global Developmental Disorders (GDD) group, which includes other neurodevelopmental disorders in addition to ASD. According to the Centers for Disease Control and Prevention (CDC), in recent years there has been an increase in the prevalence of ASD, with a probable growth in the identification of genes associated with the syndrome. This review aims to update information from gene association studies and verify the association with ASD and its prevalence, conducted following the rigor and recommendations of the Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) tool. Five databases were used, obtaining a survey of 4,404 articles, and 14 studies were selected which also highlighted the influence of 56 possible candidate genes associated with the prevalence of ASD. The SHANK3 gene was found to be the most associated with the increased prevalence of ASD, followed by the SCN2A and PARD3 genes. In conclusion, the candidate genes analyzed are associated with characteristics of the syndrome, with the SHANK3 gene being the most responsible for the increased prevalence in gene association studies. However, in-depth studies need to be conducted in order to bring robustness to this field of research.

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References

Arberas, C., & Ruggieri, V. (2019). Autism. Genetic and biological aspects. Medicina (B Aires), 79, 16–21.

Baio, J., Wiggins, L., Christensen, D. L., Maenner, M. J., Daniels, J., Warren, Z., Kurzius-Spencer, M., Zahorodny, W., Robinson Rosenberg, C., White, T., Durkin, M. S., Imm, P., Nikolaou, L., Yeargin-Allsopp, M., Lee, L.-C., Harrington, R., Lopez, M., Fitzgerald, R. T., Hewitt, A., Pettygrove, S., Constantino, J. N., Vehorn, A., Shenouda, J., Hall-Lande, J., Van Naarden Braun, K., & Dowling, N. F. (2018). Prevalence of autism spectrum disorder among children aged 8 years — Autism and Developmental Disabilities Monitoring Network, 11 sites, United States, 2014. MMWR Surveillance Summaries, 67(6), 1–23. https://doi.org/10.15585/mmwr.ss6706a1

Bhandari, R., Paliwal, J. K., & Kuhad, A. (2020). Neuropsychopathology of autism spectrum disorder: Complex interplay of genetic, epigenetic, and environmental factors. In Advances in Neurobiology (Vol. 24, pp. 97–141). Springer. https://doi.org/10.1007/978-3-030-30402-7_4

Bruno, L. P., Doddato, G., Valentino, F., Baldassarri, M., & Novelli, G. (2021). Novos candidatos para autismo/desvio intelectual identificados por sequenciamento de exoma completo. International Journal of Molecular Sciences, 22(24), 13439. https://doi.org/10.3390/ijms222413439

Callaghan, D. B., Rogic, S., Tan, P. P. C., Calli, K., Qiao, Y., Baldwin, R., Jacobson, M., Belmadani, M., Holmes, N., Yu, C., Li, Y., Li, Y., Kurtzke, F.-E., Kuzeljevic, B., Yu, A. Y., Hudson, M., Mcaughton, A. J. M., Xu, Y., Dionne-Laporte, A., Girard, S., Liang, P., Rajcan Separovic, E., Liu, X., Rouleau, G., Pavlidis, P., & Lewis, M. E. S. (2019). Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort. Clinical Genetics, 96(3), 199–206. https://doi.org/10.1111/cge.13556

Casey, J. P., Magalhães, T., Conroy, J. M., Regan, R., Shah, N., Anney, R., Shields, D. C., Abrahams, B. S., Almeida, J., Bacchelli, E., Bailey, A., Baird, G., Battaglia, A., Berney, T., Bolshakova, N., Bolton, P., Bourgeron, T., Brennan, S., Cali, P., Correia, C., Corsello, C., Coutanche, M., Dawson, G., de Jonge, M., Delorme, R., Duketis, E., Duque, F., Estes, A., Farrar, P., Fernandez, B. A., Folstein, S. E., Foley, S., Fombonne, E., Freitag, C. M., Gilbert, J., Gillberg, C., Glessner, J. T., Green, J., Guter, S. J., Hakonarson, H., Holt, R., Hughes, G., Hus, V., Igliozzi, R., Kim, C., Klauck, S. M., Kolevzon, A., Lamb, J. A., Leboyer, M., Le Couteur, A., Leventhal, B. L., Lord, C., Lund, S. C., Maestrini, E., Mantoulan, C., Marshall, C. R., McConachie, H., McDougle, C. J., McGrath, J., McMahon, W. M., Merikangas, A., Miller, J., Minopoli, F., Mirza, G. K., Munson, J., Nelson, S. F., Nygren, G., Oliveira, G., Pagnamenta, A. T., Papanikolaou, K., Parr, J. R., Parrini, B., Pickles, A., Pinto, D., Piven, J., Posey, D. J., Poustka, A., Poustka, F., Ragoussis, J., Rogé, B., Rutter, M. L., Sequeira, A. F., Soorya, L., Sousa, I., Sykes, N., Stoppioni, V., Tancredi, R., Tauber, M., Thompson, A. P., Thomson, S., Tsiantis, J., Van Engeland, H., Vincent, J. B., Volkmar, F., Vorstman, J. A. S., Wallace, S., Wang, K., Wassink, T. H., White, K., Wing, K., Wittemeyer, K., Yaspan, B. L., Zwaigenbaum, L., Betancur, C., Buxbaum, J. D., Cantor, R. M., Cook, E. H., Coon, H., Cuccaro, M. L., Geschwind, D. H., Haines, J. L., Hallmayer, J., Monaco, A. P., Nurnberger, J. I., Pericak-Vance, M. A., Schellenberg, G. D., Scherer, S. W., Sutcliffe, J. S., Szatmari, P., Vieland, V. J., Wijsman, E. M., Green, A., Gill, M., Gallagher, L., & Ennis, S. (2012). A novel approach of homozygous haplotype sharing identifies candidate genes in autism spectrum disorder. Human Genetics, 131(4), 565–579. https://doi.org/10.1007/s00439-011-1094-6

Chen, X., An, Y., Gao, Y., Guo, L., Rui, L., Xie, H., Sun, M., Hung, S. L., Sheng, X., Zou, J., Bao, Y., Guan, H., Niu, B., Li, Z., Finnell, R. H., Gusella, J. F., Wu, B.-L., & Zhang, T. (2017). Rare deleterious PARD3 variants in the aPKC-binding region are implicated in the pathogenesis of human cranial neural tube defects via disrupting apical tight junction formation. Human Mutation, 38(4), 378–389. https://doi.org/10.1002/humu.23153

Codina-Solà, M., Cuscó, I., Estivill, X., & Pérez-Jurado, L. A. (2015). Integrated analysis of whole-exome sequencing and transcriptome profiling in males with autism spectrum disorders. Molecular Autism, 6(1), 21. https://doi.org/10.1186/s13229-015-0017-0

Duffney, L. J., Zhong, P., Wei, J., Matas, E., Cheng, J., Qin, L., Ma, K., Dietz, D. M., Kajiwara, Y., Buxbaum, J. D., & Yan, Z. (2015). Autism-like deficits in Shank3-deficient mice are rescued by targeting actin regulators. Cell Reports, 11(9), 1400–1413. https://doi.org/10.1016/j.celrep.2015.04.064

Fernandes, C. S., Tomazelli, J., & Girianelli, V. R. (2020). Diagnóstico de autismo no século XXI: evolução dos domínios nas categorizações nosológicas. Psicologia: Reflexão e Crítica, 31, Article number: 27. https://doi.org/10.1590/0103-6564e200027

Griswold, A. J., Ma, D., Cukier, H., Nations, L., Schmidt, M., Chung, R., Jaworski, J., Salyakina, D., Konidari, I., Whitehead, P., Wright, H., Abramson, R., Williams, S., Menon, R., Martin, E., Haines, J., Gilbert, J., Cuccaro, M., & Pericak-Vance, M. (2012). Evaluation of copy number variations reveals novel candidate genes in autism spectrum disorder-associated pathways. Human Molecular Genetics, 21(15), 3513–3523. https://doi.org/10.1093/hmg/dds164

Guo, H., Peng, Y., Hu, Z., Li, Y., Xun, G., Ou, J., Sun, L., Xiong, Z., Liu, Y., Wang, T., Chen, J., Xia, L., Bai, T., Shen, Y., Tian, Q., Hu, Y., Shen, L., Zhao, R., Zhang, X., Zhang, F., Zhao, J., Zou, X., & Xia, K. (2017). Genome-wide copy number variation analysis in a Chinese autism spectrum disorder cohort. Scientific Reports, 7, Article number: 44155. https://doi.org/10.1038/srep44155

Hausman-Cohen, S., LaValley, W., Way, H., Gutierrez, E., & Reeder, J. (2022). Utilizing genomically targeted molecular data to improve patient-specific outcomes in autism spectrum disorder. International Journal of Molecular Sciences, 23(4), 2167. https://doi.org/10.3390/ijms23042167

Hnoonual, A., Thammachote, W., Tim-Aroon, T., Rojnueangnit, K., Hansakunachai, T., Sombuntham, T., Roongpraiwan, R., Worachotekamjorn, J., Chuthapisith, J., Fucharoen, S., Wattanasirichaigoon, D., Ruangdaraganon, N., Limprasert, P., & Jinawath, N. (2017). Chromosomal microarray analysis in a cohort of underrepresented population identifies SERINC2 as a novel candidate gene for autism spectrum disorder. Scientific Reports, 7(1), 12096. https://doi.org/10.1038/s41598-017-12317-3

Kolkman, R. W., Michel-Souzy, S., Wasserberg, D., Segerink, L. I., & Huskens, J. (2022). Density control over MBD2 receptor-coated surfaces provides superselective binding of hypermethylated DNA. ACS Applied Materials & Interfaces, 14(36), 40579–40589. https://doi.org/10.1021/acsami.2c09641

Lee, J. S., Kim, H. J., Ko, J. M., Yun, J. N., Park, S. J., Yim, S. Y., & Kim, D. K. (2018). Chromosomal microarray with clinical diagnostic utility in children with developmental delay or intellectual disability. Annals of Laboratory Medicine, 38(5), 473–480. https://doi.org/10.3343/alm.2018.38.5.473

Maenner, M. J., Shaw, K. A., Baio, J., Washington, A., Patrick, M., DiRienzo, M., Christensen, D. L., Wiggins, L. D., Pettygrove, S., Andrews, J. G., Lopez, M., Hudson, A., Baroud, T., Schwenk, Y., White, T., Rosenberg, C. R., Lee, L. C., Harrington, R. A., Huston, M., Hewitt, A., Esler, A., Hall-Lande, J., Poynter, J. N., Hallas-Muchow, L., Constantino, J. N., Fitzgerald, R. T., Zahorodny, W., Shenouda, J., Daniels, J. L., Warren, Z., Vehorn, A., Salinas, A., Durkin, M. S., & Dietz, P. M. (2020). Prevalence of autism spectrum disorder among children aged 8 years—Autism and Developmental Disabilities Monitoring Network, 11 sites, United States, 2016. MMWR Surveillance Summaries, 69(4), 1–12. https://doi.org/10.15585/mmwr.ss6904a1

Mahjani, B., De Rubeis, S., Gustavsson Mahjani, C., Mulhern, M., Xu, X., Klei, L., Satterstrom, F. K., Fu, J., Talkowski, M. E., Reichenberg, A., Sandin, S., Hultman, C. M., Grice, D. E., Roeder, K., Devlin, B., & Buxbaum, J. D. (2021). Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder. Molecular Autism, 12(1), 65. https://doi.org/10.1186/s13229-021-00465-3

Manual diagnóstico e estatístico e transtornos mentais: DSM-5. (2013). Artmed.

Moreau, C. A., Urchs, S. G. W., Kumar, K., Orban, P., Schramm, C., Dumas, G., Labbe, A., Huguet, G., Douard, E., Quirion, P.-O., Lin, A., Kushan, L., Grot, S., Luck, D., Mendrek, A., Potvin, S., Stip, E., Bourgeron, T., Evans, A. C., Bearden, C. E., Bellec, P., & Jacquemont, S. (2020). Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia. Nature Communications, 11(1), 5272. https://doi.org/10.1038/s41467-020-18997-2

O'Donnell, L., Soileau, B., Heard, P., Carter, E., Sebold, C., Gelfond, J., Hale, D. E., Cody, J. D., Perry, B., Stratton, R., & Kimonis, V. (2010). Genetic determinants of autism in individuals with deletions of 18q. Human Genetics, 128(2), 155–164. https://doi.org/10.1007/s00439-010-0839-y

Ouzzani, M., Hammady, H., Fedorowicz, Z., & Elmagarmid, A. (2016). Rayyan—a web and mobile app for systematic reviews. Systematic Reviews, 5(1), 210. https://doi.org/10.1186/s13643-016-0384-4

Özaslan, A., Kayhan, G., İşeri, E., Ergün, M. A., Güney, E., & Perçin, F. E. (2021). Identification of copy number variants in children and adolescents with autism spectrum disorder: a study from Turkey. Molecular Biology Reports, 48(5), 7371–7378. https://doi.org/10.1007/s11033-021-06745-8

Page, M. J., McKenzie, J. E., Bossuyt, P. M., Boutron, I., Hoffmann, T. C., Mulrow, C. D., Shamseer, L., Tetzlaff, J. M., Akl, E. A., Brennan, S. E., Chou, R., Glanville, J., Grimshaw, J. M., Hróbjartsson, A., Lalu, M. M., Li, T., Loder, E. W., Mayo-Wilson, E., McDonald, S., McGuinness, L. A., Stewart, L. A., Thomas, J., Tricco, A. C., Welch, V. A., Whiting, P., & Moher, D. (2021). The PRISMA 2020 statement: an updated guideline for reporting systematic reviews. BMJ, 372, n71. https://doi.org/10.1136/bmj.n71

Pereira, A. S., Shitsuka, D. M., Parreira, F. J., & Shitsuka, R. et al. (2018). Metodologia da pesquisa científica. UFSM.

Ribeiro, C. M. (2013). Estudo de genes candidatos aos Transtornos do Espectro Autista. São Paulo. Soares, W. (2022). Um retrato do autismo no Brasil. Biton.

Tian, H., Qiao, S., Zhao, Y., Jin, X., Wang, C., Wang, R., Wang, Y., Jiao, Y., Liu, Y., Zhang, B., Jin, J., Chen, Y., Jiang, Q., & Tian, W. (2022). Krüppel-like Transcription Factor 7 Is a Causal Gene in Autism Development. International Journal of Molecular Sciences, 23(6), 3376. https://doi.org/10.3390/ijms23063376

Toma, C., Torrico, B., Hervás, A., Valdés-Mas, R., Tristán-Noguero, A., Padillo, V., Maristany, M., Salgado, M., Arenas, C., Puente, X. S., Bayés, M., & Cormand, B. (2014). Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations. Molecular Psychiatry, 19(7), 784–790. https://doi.org/10.1038/mp.2013.106

Wang, F., Lu, L., Wang, S.-B., Zhang, L., Ng, C. H., Ungvari, G. S., Cao, X.-L., Lu, J.-P., Hou, C.-L., Jia, F.-J., & Xiang, Y.-T. (2018). The prevalence of autism spectrum disorders in China: A comprehensive meta-analysis. International Journal of Biological Sciences, 14(7), 717–725. https://doi.org/10.7150/ijbs.24063

Published

2025-04-04

Issue

Section

Health Sciences

How to Cite

Autism Spectrum Disorder: From genetic correlation to candidate genes. Research, Society and Development, [S. l.], v. 14, n. 4, p. e1114448581, 2025. DOI: 10.33448/rsd-v14i4.48581. Disponível em: https://ojs34.rsdjournal.org/index.php/rsd/article/view/48581. Acesso em: 28 jun. 2025.